API examples

Explore MGnify studies, analyses and results with Python and R.

Find a study, list its analyses, and load a Pfam result into a data frame. Choose an example to get started:

• Python with requests and pandas — edit and run in your browser.

• R with jsonlite — edit and run in your browser.

• Observable JS with D3 — plot Antismash cluster counts for an analysis.

• Python with MGnipy — a quick introduction and an interactive demo.

• MGnify Proteins API in Python — look up proteins, search by biome or Pfam, and build a FASTA file.

• Download analyses as CSV — save a study’s analyses to your computer.

• Map AtlantECO samples — explore sample locations in Python.

• Pathways Explorer in R — explore module completeness and detected functions.

The introductory Python and R examples start with an Antarctic soil assembly study, but can be used with any public MGnify study.